What's new in GrainGenes? -- 1995
4 December 1995
GrainGenes Database
Barley gene list, from Penny von
Wettstein-Knowles, in "Genetic Maps",
1993. Gene names, symbols, chromosomes, references.
Gene maps of barley chromosomes
2, 4 and 5, from Jerry Franckowiak,
Brian Forster and Jens Jensen. As seen
in Barley Genetics Newsletter 24.
Barley map, Vogelsanger Gold x
Alf, from Giese et al.,
Hereditas 1994
23 RAPDs, 28 RFLPs and 29 genes. (Same as the one in
Gopher, 29 Sep.)
To view the errors in interval distances via the WWW
interface, click
on a locus, then on the "Gmap data..." button.
RFLP, gliadin, quality trait survey of durum wheats, from
Mark Sorrells.
80 ICARDA wheat lines x 30 RFLPs and 5 traits.
Gopher
7. Wheat performance evaluations
State Performance Tests
Minnesota, from Jochum Wiersma. New state!
18. Software for genetics
MQTL,
from Nick Tinker
Simplified composite interval mapping of QTL in multiple
environments.
MSIM,
from Nick Tinker
Automated simulation of genetic markers and QTL.
19. GrainGenes administrative information
"Syntax rules and
conventions",from Dave Matthews
Help on creating files for submission to GrainGenes.
Other News
Check out the new "PathoGenes" database on fungal
pathogens of small
grain cereals!
<
b>http://probe.nalusda.gov:8000/plant/aboutpathogenes.html
Information includes powdery mildew isolates' reactions
to specific Ml
alleles and barley tester lines (example Isolate "58-74"),
images of
RFLPs and RAPDs used for mildew mapping (example Image "Q5
HLxR1"), and
more!
--
1 November 1995
GrainGenes Database
Saccharum map,
from Jorge da Silva and Bruno Sobral
527 APPCR and RFLP markers, 64 linkage groups; with sizes
of mapped bands
RFLP survey of Avena sterilis,
from Mark Sorrells
173 accessions x 48 OG probes. Search for "polymorphism
og*".
World Wide Web
Barle
y Genetics Newsletter Volume 24, 1995, from Diane Mather
http://probe.nalusda.gov:8000/otherdocs/bgn/bgn.html
New
"Table-maker" interface for generating downloadable
reports
http://probe.nalusda.gov:8300/cgi-bin/table-maker
Direct links from the
table of locus positions for the wheat
W7984 x Opata85 map to the autoradiogram of the mapped
fragments.
Gopher
16. Grains files to browse
"E-mail addresses from Ben
Edge"
170 electronic addresses and institutional
affiliations
--
29 September 1995
GrainGenes Database (all access modes)
Catalogue of
Gene Symbols for Wheat, 1993, from Gary Hart
The complete list of wheat genes, alleles and stocks,
converted to
database format. Try searching for "gene_class".
New and updated PCR primer sequences, from Tom Blake
A total of 230 primer pairs from Tom now.
Seven wheat microsatellites and
additional primers, from Mark Sorrells
There's no unique Gopher search for these -- try "pcr
and sorrells".
World Wide Web
Germplasm records in the GrainGenes database are now
hotlinked to
corresponding records of the CIM
MYT Wheat International Nursery Database,
and vice versa. For example look at http://probe.nalusda.gov:8300/
cgi-bin/dbrun/graingenes?find+Germplasm+%22BL+1022%22
Gopher
7. Wheat quality evaluations
"Compendium of wheat lines carrying rye ... 1RS",
from Bob Graybosch
Data for 170 additional lines, from the 1995 USDA
Regional Nurseries
16. Grains files to browse
"Barley Vogelsanger Gold x
Alf map", from Giese et al., Hereditas 1994
23 RAPDs, 28 RFLPs and 29 genes.
"PCR primers for published
probes", from Dave Matthews
Updated to include all 350 primer pairs now in the
GrainGenes database.
--
25 August 1995
4. Search the GrainGenes database
Wheat consensus map
based on Chinese Spring x Synthetic, from Mike Gale
Try searching for "locus and gale".
Barley powdery mildew
resistance genes and stocks, from Helms Joergensen
Search for "gene and ml*".
New and updated address records for 140 colleagues, from
NABGMP
7. Wheat performance evaluations
State Performance Tests
Kansas 1995, from Kraig Roozeboom
South Dakota 1993 and 1995, from
Scott Haley
16. Grains files to browse
"Cereal Rust Bulletin", from Mark Hughes
1995
Final Report
--
8 August 1995
4. Search the GrainGenes database
Hexaploid oat Kanota x Ogle
map, from Louise O'Donoughue"
Search for "map and louise".
Physical map of barley
chromosome 5 (1H), from Gottfried Kuenzel
Try searching for "physical".
Wheat groups 4, 5, 7 maps,
Synthetic W7984 x Opata85, from Clare Nelson
Search for "map and nelson".
Wheat Chinese Spring x T.
spelta map
The classic of Liu and Tsunewaki, 1991.
8. Wheat quality evaluations
Hard red spring wheat regional data, 1994, from
Gary Hareland
See the "About" file for a full description.
Durum wheat quality, 1994, from Gary
Hareland
First durum quality data!
11. Annual Wheat Newsletter, 1991-95
Volume
41, 1995, from Jon Raupp
For searching or downloading to your own word
processor.
16. Grains files to browse
"Barley Steptoe x Morex
and Harrington x TR306 base maps", Diane Mather
Direct link to Diane's ftp server at McGill.
"Literature on
Fusarium Head Blight of Wheat", from Mark Hughes
Bibliography on scab prepared by Roy Wilcoxson
"Cereal Rust Bulletin", from Mark Hughes
1995
#8.
"Kanota x Ogle oat map"
The hexaploid oat map mentioned above, in tabular form.
"Kanota x Ogle oat mapping
data"
"Wheat W7984 x Opata85 map",
from Allen Van Deynze and
Clare Nelson
Groups 4, 5, 7 maps mentioned above, plus previous
groups 1- 3.
<
b>"Wheat W7984 x Opata85 groups 4, 5, 7 mapping data",
from Clare Nelson
"Wheat CS x Spelta map"
The Kyoto wheat map mentioned above, in tabular form.
--
21 July 1995
4. Search the GrainGenes database
2_Point_Data, from Greg Penner
Twenty-one molecular markers for genes of interest,
e.g. "ts1/UBC195".
RFLP bands for probes mapped in
oat Kanota x Ogle, from Mark Sorrells
Autoradiogram images and fragment sizes for 270 probes, 380
loci.
PCR primers, from Luther Talbert
New sequences for CDO1338, KSUE18, KSUG34, KSUM149;
improved KSUE6.
16. Grains files to browse
"Reserved Laboratory Designators for DNA
Clones...", from Gary Hart
Updated June 1995
"W
heat W7984 x Opata85 groups 2 and 3 mapping data", from
Clare Nelson
"Cereal Rust Bulletin", from Mark Hughes
1995 #3 - #7.
19. GrainGenes Administrative Information
"Template for Germplasm
records", from Dave Matthews and Ken Kephart
Format for cultivars, stocks, etc. cited in datasets
you submit.
--
21 April 1995
4. Search the GrainGenes database
Diploid oat map updated,
from Allen Van Deynze
Search for "cornell2".
Wheat groups 2 and 3 maps,
Synthetic W7984 x Opata85, from Clare Nelson
Search for "map and sorrells".
7. Wheat performance evaluations
State Performance Tests
Kansas, from Kraig Roozeboom
New state!
16. Grains files to browse
"Cereal Rust Bulletin", from Mark Hughes
1995 #1 and #2.
"Diploid oat map", from Allen Van Deynze
Same map as mentioned above, in tabular form.
"Wheat W7984 x Opata85 map",
from Allen Van Deynze and
Clare Nelson
Groups 2 and 3 maps mentioned above, plus previous
group 1.
"Triticeae consensus map", from Allen Van Deynze and
Clare Nelson
Groups 1, 2 and 3.
19. GrainGenes administrative information
"Template for
2_Point_Data", from Dave Matthews
For inter-locus distances, e.g. between a gene and a
molecular marker
--
15 February 1995
3. How to
access GrainGenes
Updated info on the Plant Genome Database CD-ROM, from
Dave Matthews
4. Search the GrainGenes database
RFLP band sizes for 150 more probes mapped in the Synthetic
W7984
x Opata85 population, from Mark Sorrells
That's the lot! Autoradiogram images for a total of
350 probes,
sizes of the mapped bands for 330 loci.
7. Wheat performance evaluations
State Performance Tests
New York, from Mark Sorrells
New state!
South Dakota, from Scott Haley New
state!
8. Wheat quality evaluations
Compendium of wheat lines carrying chromosome arm
1RS, from Bob Graybosch
Updated.
19. GrainGenes administrative information
Template for Image data,
from Dave Matthews
How to submit images to GrainGenes.
--
11 January 1995
4. Search the GrainGenes database
High resolution map of part of
barley chromosome 5, from Richard DeScenzo
Try searching for "wise".
RFLP survey: 84 oat cultivars vs. 56 BCD, CDO
probes, from Mark Sorrells
Searching for "ciav*" will fetch many of the relevant
records.
RFLP band sizes for 140 more
probes mapped in the Synthetic W7984
x Opata85 population, from Mark Sorrells
The autoradiogram images for these as well as the
previous 60 are now
annotated to show which bands were used to map each locus.
7. Wheat performance evaluations
State Performance Tests
Arizona, from Michael Ottman
New state!
8. Wheat quality evaluations
Hard red spring crop quality survey, 1994", from Wayne
Moore
1282 HRS wheat samples from the northern Great Plains.
16. Grains files to browse
"Reserved Laboratory Designators for DNA Clones,
Primers and Markers",
from Gary Hart. New
edition, much expanded.
"PCR primers for published
probes", from Dave Matthews
All 220 specific primer pairs currently known to
GrainGenes.
Mailgroup
'grains@greengenes' membership, from Dave Matthews
Who gets the messages sent to this address?
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